STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A060W2A9Uncharacterized protein. (127 aa)    
Predicted Functional Partners:
A0A060XG20
Uncharacterized protein.
   
 0.772
A0A060WGC2
Ig-like domain-containing protein.
   
 0.724
UBIQ
Ubiquitin.
    
  0.724
Q9PT09_ONCMY
Ubiquitin.
    
  0.724
cxcd1
CXC chemokine d variant 1.
    
   0.723
A0A060WC27
Uncharacterized protein.
    
  0.698
A0A060X6G2
Uncharacterized protein.
    
  0.698
A0A060Y4D6
Uncharacterized protein; Belongs to the peptidase S1 family.
    
  0.698
A0A060YF30
IGv domain-containing protein.
    
  0.698
A0A060Y235
Ig-like domain-containing protein.
   
 0.669
Your Current Organism:
Oncorhynchus mykiss
NCBI taxonomy Id: 8022
Other names: O. mykiss, Oncorhynchus nerka mykiss, Parasalmo mykiss, Salmo mykiss, rainbow trout
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.