A0A060W390 protein (Oncorhynchus mykiss) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A060W390

Rieske domain-containing protein. (520 aa)

Predicted Functional Partners:

A0A060VUH5

0.939

A0A060WGF8

0.939

A0A060WJY0

0.939

A0A060XGA9

0.939

A0A060YAS8

0.939

A0A060YML6

0.939

A0A060WU62

0.921

A0A060WYW2

0.917

A0A060VUY8

0.916

A0A060XTQ8

0.916

Your Current Organism:

Oncorhynchus mykiss

NCBI taxonomy Id: 8022
Other names: O. mykiss, Oncorhynchus nerka mykiss, Parasalmo mykiss, Salmo mykiss, rainbow trout

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A060VUH5	A0A060VUY8	Cytochrome b5 heme-binding domain-containing protein.	2Fe-2S ferredoxin-type domain-containing protein.	0.921
A0A060VUH5	A0A060W390	Cytochrome b5 heme-binding domain-containing protein.	Rieske domain-containing protein.	0.939
A0A060VUH5	A0A060WGF8	Cytochrome b5 heme-binding domain-containing protein.	DAO domain-containing protein.	0.520
A0A060VUH5	A0A060WJY0	Cytochrome b5 heme-binding domain-containing protein.	DAO domain-containing protein.	0.520
A0A060VUH5	A0A060WU62	Cytochrome b5 heme-binding domain-containing protein.	Gln-synt_C domain-containing protein; Belongs to the glutamine synthetase family.	0.512
A0A060VUH5	A0A060WYW2	Cytochrome b5 heme-binding domain-containing protein.	Uncharacterized protein.	0.840
A0A060VUH5	A0A060XGA9	Cytochrome b5 heme-binding domain-containing protein.	Uncharacterized protein.	0.513
A0A060VUH5	A0A060XTQ8	Cytochrome b5 heme-binding domain-containing protein.	2Fe-2S ferredoxin-type domain-containing protein.	0.921
A0A060VUH5	A0A060YAS8	Cytochrome b5 heme-binding domain-containing protein.	Uncharacterized protein.	0.513
A0A060VUH5	A0A060YML6	Cytochrome b5 heme-binding domain-containing protein.	DAO domain-containing protein.	0.513
A0A060VUY8	A0A060VUH5	2Fe-2S ferredoxin-type domain-containing protein.	Cytochrome b5 heme-binding domain-containing protein.	0.921
A0A060VUY8	A0A060W390	2Fe-2S ferredoxin-type domain-containing protein.	Rieske domain-containing protein.	0.916
A0A060VUY8	A0A060WU62	2Fe-2S ferredoxin-type domain-containing protein.	Gln-synt_C domain-containing protein; Belongs to the glutamine synthetase family.	0.715
A0A060VUY8	A0A060WYW2	2Fe-2S ferredoxin-type domain-containing protein.	Uncharacterized protein.	0.933
A0A060W390	A0A060VUH5	Rieske domain-containing protein.	Cytochrome b5 heme-binding domain-containing protein.	0.939
A0A060W390	A0A060VUY8	Rieske domain-containing protein.	2Fe-2S ferredoxin-type domain-containing protein.	0.916
A0A060W390	A0A060WGF8	Rieske domain-containing protein.	DAO domain-containing protein.	0.939
A0A060W390	A0A060WJY0	Rieske domain-containing protein.	DAO domain-containing protein.	0.939
A0A060W390	A0A060WU62	Rieske domain-containing protein.	Gln-synt_C domain-containing protein; Belongs to the glutamine synthetase family.	0.921
A0A060W390	A0A060WYW2	Rieske domain-containing protein.	Uncharacterized protein.	0.917