STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A060W418Uncharacterized protein. (1222 aa)    
Predicted Functional Partners:
A0A060YAS9
Slu7 domain-containing protein.
   
 0.982
A0A060VZD7
Uncharacterized protein; Belongs to the DEAD box helicase family.
  
 0.969
IMP3
U3 small nucleolar ribonucleoprotein protein IMP3.
   
 0.959
A0A060X738
WD_REPEATS_REGION domain-containing protein.
   
 0.957
A0A060YQA9
SKIP_SNW domain-containing protein.
   
 0.949
A0A060XZM9
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
    
 0.948
A0A060W3Y6
MI domain-containing protein.
   
 0.946
A0A060WDQ1
MI domain-containing protein.
   
 0.946
A0A060XPV5
Uncharacterized protein.
    
 0.945
A0A060Y502
Small nuclear ribonucleoprotein G.
   
 0.943
Your Current Organism:
Oncorhynchus mykiss
NCBI taxonomy Id: 8022
Other names: O. mykiss, Oncorhynchus nerka mykiss, Parasalmo mykiss, Salmo mykiss, rainbow trout
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