STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A060W8A6IRF tryptophan pentad repeat domain-containing protein. (468 aa)    
Predicted Functional Partners:
A0A060ZXZ7
MATH domain-containing protein.
   
 0.890
A0A060VUH5
Cytochrome b5 heme-binding domain-containing protein.
     
 0.834
CCL4
C-C motif chemokine.
   
 
  0.825
A0A060YN99
Interferon regulatory factor.
  
0.792
A0A060YNP8
Death domain-containing protein.
   
 0.788
A0A060YN46
TBK1_CCD1 domain-containing protein.
    
 0.743
A0A060X2J9
Interferon regulatory factor.
  
0.741
A0A060XJ41
Uncharacterized protein.
    
 0.727
A0A060XK59
Non-specific serine/threonine protein kinase.
    
 0.727
A0A060XQE1
Non-specific serine/threonine protein kinase.
    
 0.727
Your Current Organism:
Oncorhynchus mykiss
NCBI taxonomy Id: 8022
Other names: O. mykiss, Oncorhynchus nerka mykiss, Parasalmo mykiss, Salmo mykiss, rainbow trout
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.