STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A060WAD2CAP-ZIP_m domain-containing protein. (1458 aa)    
Predicted Functional Partners:
A0A060WJQ2
Uncharacterized protein.
   
 
 0.874
A0A060WYS1
WASH_WAHD domain-containing protein.
    
 
 0.873
A0A060Z335
WASH_WAHD domain-containing protein.
    
 
 0.873
A0A060Y9F2
Uncharacterized protein.
   
 
 0.861
A0A060Z249
Uncharacterized protein.
   
 
 0.861
A0A060XUP4
ANK_REP_REGION domain-containing protein.
    
 
 0.843
A0A060WBF3
Uncharacterized protein.
    
 
 0.821
A0A060WID9
Uncharacterized protein.
    
 
 0.821
A0A060WIF2
Uncharacterized protein.
    
 
 0.821
A0A060WHP1
Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.
    
 
 0.769
Your Current Organism:
Oncorhynchus mykiss
NCBI taxonomy Id: 8022
Other names: O. mykiss, Oncorhynchus nerka mykiss, Parasalmo mykiss, Salmo mykiss, rainbow trout
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