A0A060WAS6 protein (Oncorhynchus mykiss) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A060WAS6

Endo/exonuclease/phosphatase domain-containing protein. (627 aa)

Predicted Functional Partners:

A0A060YSB1

0.962

A0A060VZ22

0.961

A0A060W7W6

0.961

A0A060WE87

0.957

A0A060WZE5

0.957

A0A060XUX4

0.943

A0A060VTB6

0.936

A0A060YGF7

0.936

A0A060W3N1

0.925

A0A060WAQ3

0.925

Your Current Organism:

Oncorhynchus mykiss

NCBI taxonomy Id: 8022
Other names: O. mykiss, Oncorhynchus nerka mykiss, Parasalmo mykiss, Salmo mykiss, rainbow trout

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A060VTB6	A0A060VZ22	Uncharacterized protein.	Uncharacterized protein.	0.992
A0A060VTB6	A0A060W3N1	Uncharacterized protein.	Uncharacterized protein.	0.990
A0A060VTB6	A0A060W7W6	Uncharacterized protein.	Uncharacterized protein.	0.992
A0A060VTB6	A0A060WAQ3	Uncharacterized protein.	Not1 domain-containing protein.	0.990
A0A060VTB6	A0A060WAS6	Uncharacterized protein.	Endo/exonuclease/phosphatase domain-containing protein.	0.936
A0A060VTB6	A0A060WE87	Uncharacterized protein.	NOT2_3_5 domain-containing protein.	0.994
A0A060VTB6	A0A060WZE5	Uncharacterized protein.	NOT2_3_5 domain-containing protein.	0.994
A0A060VTB6	A0A060XUX4	Uncharacterized protein.	Uncharacterized protein.	0.924
A0A060VTB6	A0A060YSB1	Uncharacterized protein.	Uncharacterized protein.	0.992
A0A060VZ22	A0A060VTB6	Uncharacterized protein.	Uncharacterized protein.	0.992
A0A060VZ22	A0A060W3N1	Uncharacterized protein.	Uncharacterized protein.	0.983
A0A060VZ22	A0A060WAQ3	Uncharacterized protein.	Not1 domain-containing protein.	0.983
A0A060VZ22	A0A060WAS6	Uncharacterized protein.	Endo/exonuclease/phosphatase domain-containing protein.	0.961
A0A060VZ22	A0A060WE87	Uncharacterized protein.	NOT2_3_5 domain-containing protein.	0.993
A0A060VZ22	A0A060WZE5	Uncharacterized protein.	NOT2_3_5 domain-containing protein.	0.993
A0A060VZ22	A0A060XUX4	Uncharacterized protein.	Uncharacterized protein.	0.977
A0A060VZ22	A0A060YGF7	Uncharacterized protein.	Uncharacterized protein.	0.992
A0A060VZ22	A0A060YSB1	Uncharacterized protein.	Uncharacterized protein.	0.891
A0A060W3N1	A0A060VTB6	Uncharacterized protein.	Uncharacterized protein.	0.990
A0A060W3N1	A0A060VZ22	Uncharacterized protein.	Uncharacterized protein.	0.983