A0A060WGE5 protein (Oncorhynchus mykiss) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A060WGE5

USP domain-containing protein; Belongs to the peptidase C19 family. (331 aa)

Predicted Functional Partners:

A0A060Y3B2

0.961

A0A060YCF8

0.954

A0A060VZM9

0.944

A0A060X6S5

0.915

A0A060Y9V2

0.915

A0A060X656

0.911

A0A060W1P0

0.904

A0A060W248

0.904

A0A060YH96

0.904

A0A060YHT0

0.904

Your Current Organism:

Oncorhynchus mykiss

NCBI taxonomy Id: 8022
Other names: O. mykiss, Oncorhynchus nerka mykiss, Parasalmo mykiss, Salmo mykiss, rainbow trout

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A060VZM9	A0A060W1P0	Uncharacterized protein.	GED domain-containing protein.	0.749
A0A060VZM9	A0A060W248	Uncharacterized protein.	Dynamin-type G domain-containing protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.749
A0A060VZM9	A0A060WGE5	Uncharacterized protein.	USP domain-containing protein; Belongs to the peptidase C19 family.	0.944
A0A060VZM9	A0A060X656	Uncharacterized protein.	Thymidylate_kin domain-containing protein.	0.880
A0A060VZM9	A0A060X6S5	Uncharacterized protein.	Elp3 domain-containing protein.	0.934
A0A060VZM9	A0A060Y3B2	Uncharacterized protein.	Uncharacterized protein.	0.985
A0A060VZM9	A0A060Y9V2	Uncharacterized protein.	Elp3 domain-containing protein.	0.934
A0A060VZM9	A0A060YCF8	Uncharacterized protein.	RLR CTR domain-containing protein.	0.979
A0A060VZM9	A0A060YH96	Uncharacterized protein.	Dynamin-type G domain-containing protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.749
A0A060VZM9	A0A060YHT0	Uncharacterized protein.	Dynamin-type G domain-containing protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.749
A0A060W1P0	A0A060VZM9	GED domain-containing protein.	Uncharacterized protein.	0.749
A0A060W1P0	A0A060W248	GED domain-containing protein.	Dynamin-type G domain-containing protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.479
A0A060W1P0	A0A060WGE5	GED domain-containing protein.	USP domain-containing protein; Belongs to the peptidase C19 family.	0.904
A0A060W1P0	A0A060X656	GED domain-containing protein.	Thymidylate_kin domain-containing protein.	0.812
A0A060W1P0	A0A060X6S5	GED domain-containing protein.	Elp3 domain-containing protein.	0.843
A0A060W1P0	A0A060Y3B2	GED domain-containing protein.	Uncharacterized protein.	0.683
A0A060W1P0	A0A060Y9V2	GED domain-containing protein.	Elp3 domain-containing protein.	0.843
A0A060W1P0	A0A060YCF8	GED domain-containing protein.	RLR CTR domain-containing protein.	0.810
A0A060W1P0	A0A060YH96	GED domain-containing protein.	Dynamin-type G domain-containing protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.500
A0A060W1P0	A0A060YHT0	GED domain-containing protein.	Dynamin-type G domain-containing protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.455