A0A060WHU9 protein (Oncorhynchus mykiss) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A060WHU9

Protein kinase domain-containing protein. (404 aa)

Predicted Functional Partners:

A0A060XVD9

0.881

A0A060WT94

0.859

A0A060W5B2

0.785

A0A060YT34

0.785

A0A060WDM1

0.718

A0A060WLB7

0.716

A0A060WZ37

0.716

A0A060Y7A8

0.716

A0A060YL36

0.716

A0A060VYW3

0.703

Your Current Organism:

Oncorhynchus mykiss

NCBI taxonomy Id: 8022
Other names: O. mykiss, Oncorhynchus nerka mykiss, Parasalmo mykiss, Salmo mykiss, rainbow trout

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A060VYW3	A0A060W5B2	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	RING-type domain-containing protein.	0.912
A0A060VYW3	A0A060WHU9	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Protein kinase domain-containing protein.	0.703
A0A060VYW3	A0A060WLB7	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.714
A0A060VYW3	A0A060WZ37	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.714
A0A060VYW3	A0A060XVD9	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.400
A0A060VYW3	A0A060Y7A8	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.714
A0A060VYW3	A0A060YL36	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.714
A0A060VYW3	A0A060YT34	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	RING-type domain-containing protein.	0.912
A0A060W5B2	A0A060VYW3	RING-type domain-containing protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.912
A0A060W5B2	A0A060WHU9	RING-type domain-containing protein.	Protein kinase domain-containing protein.	0.785
A0A060W5B2	A0A060WLB7	RING-type domain-containing protein.	Uncharacterized protein.	0.886
A0A060W5B2	A0A060WZ37	RING-type domain-containing protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.886
A0A060W5B2	A0A060XVD9	RING-type domain-containing protein.	Uncharacterized protein.	0.871
A0A060W5B2	A0A060Y7A8	RING-type domain-containing protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.886
A0A060W5B2	A0A060YL36	RING-type domain-containing protein.	Uncharacterized protein.	0.886
A0A060W5B2	A0A060YT34	RING-type domain-containing protein.	RING-type domain-containing protein.	0.694
A0A060WDM1	A0A060WHU9	TIR domain-containing protein.	Protein kinase domain-containing protein.	0.718
A0A060WDM1	A0A060WLB7	TIR domain-containing protein.	Uncharacterized protein.	0.649
A0A060WDM1	A0A060WZ37	TIR domain-containing protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.649
A0A060WDM1	A0A060Y7A8	TIR domain-containing protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.649