STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A060WIM0NR LBD domain-containing protein. (385 aa)    
Predicted Functional Partners:
A0A060YFT3
Uncharacterized protein.
    
 0.976
A0A060X5R5
Uncharacterized protein.
    
 0.957
A0A060X6T5
Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
    
 0.957
A0A060VZ13
BZIP domain-containing protein; Belongs to the bZIP family.
    
 0.930
A0A060YBG9
BZIP domain-containing protein; Belongs to the bZIP family.
    
 0.930
A0A060Y1N2
BZIP domain-containing protein.
    
 0.922
A0A060YTG7
BZIP domain-containing protein.
    
 0.922
A0A060WMW9
Uncharacterized protein.
    
 0.910
A0A060Y9W2
Uncharacterized protein.
    
 0.910
A0A060Z011
Nuclear receptor domain-containing protein.
   
 0.901
Your Current Organism:
Oncorhynchus mykiss
NCBI taxonomy Id: 8022
Other names: O. mykiss, Oncorhynchus nerka mykiss, Parasalmo mykiss, Salmo mykiss, rainbow trout
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