STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A060WJB7Uncharacterized protein. (496 aa)    
Predicted Functional Partners:
A0A060W1T3
Uncharacterized protein.
  
 0.982
A0A060XU45
Uncharacterized protein.
  
 0.977
A0A060W4U8
Uncharacterized protein.
   
 0.939
A0A060W9J9
Uncharacterized protein.
   
 0.939
A0A060X933
Uncharacterized protein.
   
 0.939
TDO2
Tryptophan 2,3-dioxygenase; Heme-dependent dioxygenase that catalyzes the oxidative cleavage of the L-tryptophan (L-Trp) pyrrole ring and converts L- tryptophan to N-formyl-L-kynurenine. Catalyzes the oxidative cleavage of the indole moiety.
  
 
 0.935
A0A060Z494
Uncharacterized protein.
  
 
 0.935
A0A060VWM6
Indoleamine 2,3-dioxygenase.
   
 
 0.934
A0A060Z0S2
DHFR domain-containing protein.
     
 0.914
A0A060VNM3
Uncharacterized protein.
   
 
 0.899
Your Current Organism:
Oncorhynchus mykiss
NCBI taxonomy Id: 8022
Other names: O. mykiss, Oncorhynchus nerka mykiss, Parasalmo mykiss, Salmo mykiss, rainbow trout
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