STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A060WLG9Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family. (400 aa)    
Predicted Functional Partners:
A0A060WRF3
Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.
  
0.795
A0A060YCV1
Uncharacterized protein.
   
 0.791
A0A060Y1A4
Neur_chan_LBD domain-containing protein.
  
  
 
0.750
A0A060VUS8
Neur_chan_memb domain-containing protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.
  
0.709
A0A060Y346
Neur_chan_memb domain-containing protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.
  
0.707
A0A060W0V5
Neur_chan_memb domain-containing protein.
  
0.705
A0A060Y6I0
Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.
  
0.705
A0A060WWQ4
Neur_chan_memb domain-containing protein.
  
0.702
A0A060WZR9
Chromo domain-containing protein.
  
0.702
A0A060VMQ4
Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.
  
0.701
Your Current Organism:
Oncorhynchus mykiss
NCBI taxonomy Id: 8022
Other names: O. mykiss, Oncorhynchus nerka mykiss, Parasalmo mykiss, Salmo mykiss, rainbow trout
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