A0A060WLJ7 protein (Oncorhynchus mykiss) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A060WLJ7

Uncharacterized protein. (357 aa)

Predicted Functional Partners:

A0A060VUG2

0.661

A0A060VX19

0.661

A0A060W9Z0

0.569

A0A060X7W3

0.569

A0A060XSB1

0.522

A0A060VYL0

0.521

A0A060WW19

0.521

A0A060X2I7

0.521

A0A060X9I3

0.521

A0A060X0U3

0.511

Your Current Organism:

Oncorhynchus mykiss

NCBI taxonomy Id: 8022
Other names: O. mykiss, Oncorhynchus nerka mykiss, Parasalmo mykiss, Salmo mykiss, rainbow trout

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A060VUG2	A0A060VYL0	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	Uncharacterized protein.	0.992
A0A060VUG2	A0A060W9Z0	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	Uncharacterized protein.	0.996
A0A060VUG2	A0A060WLJ7	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	Uncharacterized protein.	0.661
A0A060VUG2	A0A060WW19	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	Uncharacterized protein.	0.992
A0A060VUG2	A0A060X2I7	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	Uncharacterized protein.	0.992
A0A060VUG2	A0A060X7W3	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	Uncharacterized protein.	0.996
A0A060VUG2	A0A060X9I3	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	Uncharacterized protein.	0.992
A0A060VX19	A0A060VYL0	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	Uncharacterized protein.	0.992
A0A060VX19	A0A060W9Z0	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	Uncharacterized protein.	0.996
A0A060VX19	A0A060WLJ7	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	Uncharacterized protein.	0.661
A0A060VX19	A0A060WW19	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	Uncharacterized protein.	0.992
A0A060VX19	A0A060X2I7	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	Uncharacterized protein.	0.992
A0A060VX19	A0A060X7W3	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	Uncharacterized protein.	0.996
A0A060VX19	A0A060X9I3	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	Uncharacterized protein.	0.992
A0A060VYL0	A0A060VUG2	Uncharacterized protein.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.992
A0A060VYL0	A0A060VX19	Uncharacterized protein.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.992
A0A060VYL0	A0A060W9Z0	Uncharacterized protein.	Uncharacterized protein.	0.961
A0A060VYL0	A0A060WLJ7	Uncharacterized protein.	Uncharacterized protein.	0.521
A0A060VYL0	A0A060X7W3	Uncharacterized protein.	Uncharacterized protein.	0.961
A0A060W9Z0	A0A060VUG2	Uncharacterized protein.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.996