STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A060WNY0Uncharacterized protein. (622 aa)    
Predicted Functional Partners:
A0A060XM74
C2H2-type domain-containing protein.
    
 
 0.866
A0A060YU09
C2H2-type domain-containing protein.
    
 
 0.866
A0A060X5R5
Uncharacterized protein.
    
  0.805
A0A060X6T5
Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
    
  0.805
A0A060VZ47
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
 0.793
A0A060XIY4
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
 0.793
A0A060WMW9
Uncharacterized protein.
    
 0.753
A0A060Y9W2
Uncharacterized protein.
    
 0.753
A0A060VN52
SANT domain-containing protein.
   
 0.729
A0A060VND2
Uncharacterized protein.
   
 0.729
Your Current Organism:
Oncorhynchus mykiss
NCBI taxonomy Id: 8022
Other names: O. mykiss, Oncorhynchus nerka mykiss, Parasalmo mykiss, Salmo mykiss, rainbow trout
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.