A0A060WPV3 protein (Oncorhynchus mykiss) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A060WPV3

BTB domain-containing protein. (298 aa)

Predicted Functional Partners:

A0A060XNA5

0.886

A0A060Z4Z5

0.864

A0A060X3Y1

0.825

A0A060YF09

0.749

A0A060YIZ8

0.749

A0A060XCU5

0.733

A0A060YXW7

0.723

A0A060YKK6

0.719

A0A060Y6U5

0.716

A0A060WAF7

0.711

Your Current Organism:

Oncorhynchus mykiss

NCBI taxonomy Id: 8022
Other names: O. mykiss, Oncorhynchus nerka mykiss, Parasalmo mykiss, Salmo mykiss, rainbow trout

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A060WAF7	A0A060WPV3	ACOX domain-containing protein.	BTB domain-containing protein.	0.711
A0A060WAF7	A0A060X3Y1	ACOX domain-containing protein.	Carrier domain-containing protein.	0.850
A0A060WAF7	A0A060XNA5	ACOX domain-containing protein.	Uncharacterized protein.	0.947
A0A060WAF7	A0A060YKK6	ACOX domain-containing protein.	2-oxoisovalerate dehydrogenase subunit alpha; The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3).	0.784
A0A060WAF7	A0A060Z4Z5	ACOX domain-containing protein.	Uncharacterized protein.	0.948
A0A060WPV3	A0A060WAF7	BTB domain-containing protein.	ACOX domain-containing protein.	0.711
A0A060WPV3	A0A060X3Y1	BTB domain-containing protein.	Carrier domain-containing protein.	0.825
A0A060WPV3	A0A060XCU5	BTB domain-containing protein.	Uncharacterized protein.	0.733
A0A060WPV3	A0A060XNA5	BTB domain-containing protein.	Uncharacterized protein.	0.886
A0A060WPV3	A0A060Y6U5	BTB domain-containing protein.	DLH domain-containing protein.	0.716
A0A060WPV3	A0A060YF09	BTB domain-containing protein.	Isochorismatase domain-containing protein.	0.749
A0A060WPV3	A0A060YIZ8	BTB domain-containing protein.	Isochorismatase domain-containing protein.	0.749
A0A060WPV3	A0A060YKK6	BTB domain-containing protein.	2-oxoisovalerate dehydrogenase subunit alpha; The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3).	0.719
A0A060WPV3	A0A060YXW7	BTB domain-containing protein.	Uncharacterized protein.	0.723
A0A060WPV3	A0A060Z4Z5	BTB domain-containing protein.	Uncharacterized protein.	0.864
A0A060X3Y1	A0A060WAF7	Carrier domain-containing protein.	ACOX domain-containing protein.	0.850
A0A060X3Y1	A0A060WPV3	Carrier domain-containing protein.	BTB domain-containing protein.	0.825
A0A060X3Y1	A0A060XCU5	Carrier domain-containing protein.	Uncharacterized protein.	0.909
A0A060X3Y1	A0A060XNA5	Carrier domain-containing protein.	Uncharacterized protein.	0.517
A0A060X3Y1	A0A060Y6U5	Carrier domain-containing protein.	DLH domain-containing protein.	0.902