A0A060WPX3 protein (Oncorhynchus mykiss) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A060WPX3

Rab-GAP TBC domain-containing protein. (320 aa)

Predicted Functional Partners:

A0A060VYG2

0.884

A0A060W5K6

0.884

A0A060W6Y8

0.884

A0A060W7C6

0.884

A0A060WFU5

0.884

A0A060WJ75

0.884

A0A060WM92

0.884

A0A060X2S0

0.884

A0A060YJD3

0.884

A0A060X5Q2

0.726

Your Current Organism:

Oncorhynchus mykiss

NCBI taxonomy Id: 8022
Other names: O. mykiss, Oncorhynchus nerka mykiss, Parasalmo mykiss, Salmo mykiss, rainbow trout

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A060VYG2	A0A060W6Y8	Uncharacterized protein.	Uncharacterized protein.	0.789
A0A060VYG2	A0A060WM92	Uncharacterized protein.	Uncharacterized protein.	0.789
A0A060VYG2	A0A060WPX3	Uncharacterized protein.	Rab-GAP TBC domain-containing protein.	0.884
A0A060W5K6	A0A060W6Y8	Uncharacterized protein.	Uncharacterized protein.	0.789
A0A060W5K6	A0A060WM92	Uncharacterized protein.	Uncharacterized protein.	0.789
A0A060W5K6	A0A060WPX3	Uncharacterized protein.	Rab-GAP TBC domain-containing protein.	0.884
A0A060W6Y8	A0A060VYG2	Uncharacterized protein.	Uncharacterized protein.	0.789
A0A060W6Y8	A0A060W5K6	Uncharacterized protein.	Uncharacterized protein.	0.789
A0A060W6Y8	A0A060W7C6	Uncharacterized protein.	Uncharacterized protein.	0.789
A0A060W6Y8	A0A060WFU5	Uncharacterized protein.	Uncharacterized protein.	0.789
A0A060W6Y8	A0A060WJ75	Uncharacterized protein.	Uncharacterized protein.	0.789
A0A060W6Y8	A0A060WPX3	Uncharacterized protein.	Rab-GAP TBC domain-containing protein.	0.884
A0A060W6Y8	A0A060X2S0	Uncharacterized protein.	Uncharacterized protein.	0.789
A0A060W6Y8	A0A060YJD3	Uncharacterized protein.	Uncharacterized protein.	0.789
A0A060W7C6	A0A060W6Y8	Uncharacterized protein.	Uncharacterized protein.	0.789
A0A060W7C6	A0A060WM92	Uncharacterized protein.	Uncharacterized protein.	0.789
A0A060W7C6	A0A060WPX3	Uncharacterized protein.	Rab-GAP TBC domain-containing protein.	0.884
A0A060WFU5	A0A060W6Y8	Uncharacterized protein.	Uncharacterized protein.	0.789
A0A060WFU5	A0A060WM92	Uncharacterized protein.	Uncharacterized protein.	0.789
A0A060WFU5	A0A060WPX3	Uncharacterized protein.	Rab-GAP TBC domain-containing protein.	0.884