STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A060WQJ4Uncharacterized protein; Belongs to the intermediate filament family. (661 aa)    
Predicted Functional Partners:
A0A060YQ81
Uncharacterized protein; Belongs to the peptidase C14A family.
   
 0.916
A0A060Z6N8
LEM domain-containing protein.
    
 0.880
A0A060Z240
Uncharacterized protein.
   
 0.879
A0A060YUZ3
Uncharacterized protein.
   
 0.870
BAF
Barrier-to-autointegration factor.
   
 0.870
BAF-2
Barrier-to-autointegration factor.
   
 0.870
A0A060Y4D1
Uncharacterized protein; Belongs to the intermediate filament family.
  
  
0.851
A0A060YN06
Peptidase S1 domain-containing protein.
    
 0.848
A0A060Z6C2
Peptidase S1 domain-containing protein.
    
 0.848
A0A060ZG03
Peptidase S1 domain-containing protein.
    
 0.847
Your Current Organism:
Oncorhynchus mykiss
NCBI taxonomy Id: 8022
Other names: O. mykiss, Oncorhynchus nerka mykiss, Parasalmo mykiss, Salmo mykiss, rainbow trout
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.