STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A060WSU4Helicase ATP-binding domain-containing protein. (736 aa)    
Predicted Functional Partners:
A0A060WGD3
Uncharacterized protein.
    
 0.994
A0A060Y436
General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.
    
 0.994
A0A060YHU8
CYCLIN domain-containing protein; Belongs to the cyclin family.
    
 0.994
A0A060YIW0
Uncharacterized protein.
    
 0.994
A0A061A741
Uncharacterized protein.
    
 0.994
TF2H5
TFIIH basal transcription factor complex TTD-A subunit.
    
 0.993
A0A060VMU1
MAT1 domain-containing protein.
    
 0.992
A0A060WQL8
CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex.
    
 0.992
A0A060XZX0
Ssl1 domain-containing protein.
    
 0.992
A0A060Z4Q9
C2H2-type domain-containing protein.
    
 0.992
Your Current Organism:
Oncorhynchus mykiss
NCBI taxonomy Id: 8022
Other names: O. mykiss, Oncorhynchus nerka mykiss, Parasalmo mykiss, Salmo mykiss, rainbow trout
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.