STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A060WT55Uncharacterized protein. (312 aa)    
Predicted Functional Partners:
A0A060ZHR6
Uncharacterized protein; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 0.859
A0A060WEB4
Helicase ATP-binding domain-containing protein.
   
 0.852
A0A060WLM0
Helicase C-terminal domain-containing protein.
   
 0.852
A0A060WXK3
Uncharacterized protein; Belongs to the actin family.
    
 0.826
A0A060X6M6
Uncharacterized protein.
   
 0.820
A0A060W6N5
ARID domain-containing protein.
   
 0.788
A0A060WG79
Uncharacterized protein.
   
 0.788
A0A060WGL3
ARID domain-containing protein.
   
 0.788
A0A060YN94
Tudor-knot domain-containing protein.
   
 0.788
A0A060YWL0
Uncharacterized protein.
   
 0.779
Your Current Organism:
Oncorhynchus mykiss
NCBI taxonomy Id: 8022
Other names: O. mykiss, Oncorhynchus nerka mykiss, Parasalmo mykiss, Salmo mykiss, rainbow trout
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