A0A060WTB4 protein (Oncorhynchus mykiss) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A060WTB4

Uncharacterized protein. (290 aa)

Predicted Functional Partners:

A0A060WE73

0.578

A0A060XF28

0.578

A0A060VRY9

0.481

A0A060W2M9

0.481

A0A060W7Y9

0.481

A0A060WWZ0

0.481

A0A060YJR4

0.481

A0A060WI60

0.475

A0A060XI72

0.475

A0A060YQ38

0.475

Your Current Organism:

Oncorhynchus mykiss

NCBI taxonomy Id: 8022
Other names: O. mykiss, Oncorhynchus nerka mykiss, Parasalmo mykiss, Salmo mykiss, rainbow trout

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A060VRY9	A0A060WTB4	Uncharacterized protein.	Uncharacterized protein.	0.481
A0A060W2M9	A0A060WTB4	Uncharacterized protein.	Uncharacterized protein.	0.481
A0A060W7Y9	A0A060WTB4	Uncharacterized protein.	Uncharacterized protein.	0.481
A0A060WE73	A0A060WTB4	Importin N-terminal domain-containing protein.	Uncharacterized protein.	0.578
A0A060WE73	A0A060XF28	Importin N-terminal domain-containing protein.	Importin N-terminal domain-containing protein.	0.910
A0A060WI60	A0A060WTB4	Uncharacterized protein.	Uncharacterized protein.	0.475
A0A060WTB4	A0A060VRY9	Uncharacterized protein.	Uncharacterized protein.	0.481
A0A060WTB4	A0A060W2M9	Uncharacterized protein.	Uncharacterized protein.	0.481
A0A060WTB4	A0A060W7Y9	Uncharacterized protein.	Uncharacterized protein.	0.481
A0A060WTB4	A0A060WE73	Uncharacterized protein.	Importin N-terminal domain-containing protein.	0.578
A0A060WTB4	A0A060WI60	Uncharacterized protein.	Uncharacterized protein.	0.475
A0A060WTB4	A0A060WWZ0	Uncharacterized protein.	Uncharacterized protein.	0.481
A0A060WTB4	A0A060XF28	Uncharacterized protein.	Importin N-terminal domain-containing protein.	0.578
A0A060WTB4	A0A060XI72	Uncharacterized protein.	Uncharacterized protein.	0.475
A0A060WTB4	A0A060YJR4	Uncharacterized protein.	Uncharacterized protein.	0.481
A0A060WTB4	A0A060YQ38	Uncharacterized protein.	Uncharacterized protein.	0.475
A0A060WWZ0	A0A060WTB4	Uncharacterized protein.	Uncharacterized protein.	0.481
A0A060XF28	A0A060WE73	Importin N-terminal domain-containing protein.	Importin N-terminal domain-containing protein.	0.910
A0A060XF28	A0A060WTB4	Importin N-terminal domain-containing protein.	Uncharacterized protein.	0.578
A0A060XI72	A0A060WTB4	Uncharacterized protein.	Uncharacterized protein.	0.475