STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A060WU07Uncharacterized protein. (150 aa)    
Predicted Functional Partners:
A0A061A7H2
LIM zinc-binding domain-containing protein.
    
   0.703
A0A060W665
Tuftelin-interacting protein 11; Involved in pre-mRNA splicing, specifically in spliceosome disassembly during late-stage splicing events. Belongs to the TFP11/STIP family.
    
 
 0.614
A0A060XPN5
Uncharacterized protein.
      
 0.501
A0A060XH12
Uncharacterized protein.
      
 0.450
A0A060WKE3
SMC_N domain-containing protein.
    
   0.428
A0A060WS77
AAA_23 domain-containing protein.
    
   0.428
A0A060XB77
SMC_N domain-containing protein.
    
   0.428
A0A060ZQU3
Uncharacterized protein.
    
   0.428
A0A060WCX9
Rab-GAP TBC domain-containing protein.
    
 
 0.403
A0A060WDB6
Uncharacterized protein.
    
 
 0.403
Your Current Organism:
Oncorhynchus mykiss
NCBI taxonomy Id: 8022
Other names: O. mykiss, Oncorhynchus nerka mykiss, Parasalmo mykiss, Salmo mykiss, rainbow trout
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