STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A060WZM5Sema domain-containing protein. (396 aa)    
Predicted Functional Partners:
A0A060YGX3
Uncharacterized protein; Belongs to the semaphorin family.
    
 0.840
A0A060Z9S8
Sema domain-containing protein; Belongs to the semaphorin family.
    
 0.840
A0A060X817
Uncharacterized protein; Belongs to the semaphorin family.
    
 0.831
A0A060XSF4
Ig-like domain-containing protein.
    
 0.831
A0A060XSZ8
Sema domain-containing protein; Belongs to the semaphorin family.
    
 0.831
A0A060XXQ8
Uncharacterized protein; Belongs to the semaphorin family.
    
 0.831
A0A060WR88
Uncharacterized protein.
    
 0.749
A0A060VUD4
Uncharacterized protein.
    
 0.748
A0A060WFV3
Uncharacterized protein.
    
 0.748
A0A060WHY6
Uncharacterized protein.
    
 0.748
Your Current Organism:
Oncorhynchus mykiss
NCBI taxonomy Id: 8022
Other names: O. mykiss, Oncorhynchus nerka mykiss, Parasalmo mykiss, Salmo mykiss, rainbow trout
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