A0A060X0U6 protein (Oncorhynchus mykiss) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A060X0U6

Uncharacterized protein. (228 aa)

Predicted Functional Partners:

A0A060VU94

0.900

A0A060Z3X8

0.663

A0A060YHS0

0.633

Mb

0.633

A0A060X189

0.629

A0A060VV31

0.617

A0A060VVD0

0.617

A0A060W0S8

0.617

A0A060VYP9

0.598

A0A060XFG9

0.597

Your Current Organism:

Oncorhynchus mykiss

NCBI taxonomy Id: 8022
Other names: O. mykiss, Oncorhynchus nerka mykiss, Parasalmo mykiss, Salmo mykiss, rainbow trout

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A060VU94	A0A060VV31	A0A060VU94	A0A060VV31	Uncharacterized protein.	Uncharacterized protein.	0.807
A0A060VU94	A0A060VVD0	A0A060VU94	A0A060VVD0	Uncharacterized protein.	LIM zinc-binding domain-containing protein.	0.807
A0A060VU94	A0A060VYP9	A0A060VU94	A0A060VYP9	Uncharacterized protein.	Uncharacterized protein.	0.575
A0A060VU94	A0A060W0S8	A0A060VU94	A0A060W0S8	Uncharacterized protein.	Uncharacterized protein.	0.807
A0A060VU94	A0A060X0U6	A0A060VU94	A0A060X0U6	Uncharacterized protein.	Uncharacterized protein.	0.900
A0A060VU94	A0A060X189	A0A060VU94	A0A060X189	Uncharacterized protein.	Uncharacterized protein.	0.677
A0A060VU94	A0A060YHS0	A0A060VU94	A0A060YHS0	Uncharacterized protein.	Myoglobin; Serves as a reserve supply of oxygen and facilitates the movement of oxygen within muscles.	0.821
A0A060VU94	A0A060Z3X8	A0A060VU94	A0A060Z3X8	Uncharacterized protein.	SHSP domain-containing protein; Belongs to the small heat shock protein (HSP20) family.	0.664
A0A060VU94	Mb	A0A060VU94	D0FZZ1	Uncharacterized protein.	Myoglobin; Serves as a reserve supply of oxygen and facilitates the movement of oxygen within muscles.	0.821
A0A060VV31	A0A060VU94	A0A060VV31	A0A060VU94	Uncharacterized protein.	Uncharacterized protein.	0.807
A0A060VV31	A0A060VVD0	A0A060VV31	A0A060VVD0	Uncharacterized protein.	LIM zinc-binding domain-containing protein.	0.478
A0A060VV31	A0A060X0U6	A0A060VV31	A0A060X0U6	Uncharacterized protein.	Uncharacterized protein.	0.617
A0A060VV31	A0A060Z3X8	A0A060VV31	A0A060Z3X8	Uncharacterized protein.	SHSP domain-containing protein; Belongs to the small heat shock protein (HSP20) family.	0.536
A0A060VVD0	A0A060VU94	A0A060VVD0	A0A060VU94	LIM zinc-binding domain-containing protein.	Uncharacterized protein.	0.807
A0A060VVD0	A0A060VV31	A0A060VVD0	A0A060VV31	LIM zinc-binding domain-containing protein.	Uncharacterized protein.	0.478
A0A060VVD0	A0A060W0S8	A0A060VVD0	A0A060W0S8	LIM zinc-binding domain-containing protein.	Uncharacterized protein.	0.499
A0A060VVD0	A0A060X0U6	A0A060VVD0	A0A060X0U6	LIM zinc-binding domain-containing protein.	Uncharacterized protein.	0.617
A0A060VVD0	A0A060Z3X8	A0A060VVD0	A0A060Z3X8	LIM zinc-binding domain-containing protein.	SHSP domain-containing protein; Belongs to the small heat shock protein (HSP20) family.	0.536
A0A060VYP9	A0A060VU94	A0A060VYP9	A0A060VU94	Uncharacterized protein.	Uncharacterized protein.	0.575
A0A060VYP9	A0A060X0U6	A0A060VYP9	A0A060X0U6	Uncharacterized protein.	Uncharacterized protein.	0.598