STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A060X6W4WD_REPEATS_REGION domain-containing protein. (496 aa)    
Predicted Functional Partners:
A0A060Y373
Uncharacterized protein.
   
 
 0.989
A0A060YAE3
Brix domain-containing protein.
   
 
 0.985
A0A060X6H2
Uncharacterized protein.
   
 
 0.983
A0A060WB41
Brix domain-containing protein.
   
 
 0.967
A0A060WI74
Brix domain-containing protein.
   
 
 0.967
A0A060XUT9
Uncharacterized protein.
   
 
 0.962
A0A060YYS7
Uncharacterized protein.
   
 
 0.962
A0A060Y986
Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family.
   
  
 0.960
A0A060XEE7
WD_REPEATS_REGION domain-containing protein.
   
 
0.955
A0A060W4W6
PUM-HD domain-containing protein.
   
 
 0.954
Your Current Organism:
Oncorhynchus mykiss
NCBI taxonomy Id: 8022
Other names: O. mykiss, Oncorhynchus nerka mykiss, Parasalmo mykiss, Salmo mykiss, rainbow trout
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.