A0A060X9I2 protein (Oncorhynchus mykiss) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A060X9I2

Uncharacterized protein. (319 aa)

Predicted Functional Partners:

A0A060Y759

0.995

A0A060Y8R8

0.995

A0A060XST9

0.971

A0A060W842

0.964

A0A060WRA1

0.964

A0A060WV21

0.959

A0A060XJJ5

0.953

A0A060XRV0

0.953

A0A060VX91

0.952

A0A060YXI0

0.947

Your Current Organism:

Oncorhynchus mykiss

NCBI taxonomy Id: 8022
Other names: O. mykiss, Oncorhynchus nerka mykiss, Parasalmo mykiss, Salmo mykiss, rainbow trout

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A060VX91	A0A060WV21	Ribonuclease P protein subunit p29; Component of ribonuclease P, a ribonucleoprotein complex that generates mature tRNA molecules by cleaving their 5'-ends.	Ribonuclease P/MRP protein subunit POP5; Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends.	0.999
A0A060VX91	A0A060X9I2	Ribonuclease P protein subunit p29; Component of ribonuclease P, a ribonucleoprotein complex that generates mature tRNA molecules by cleaving their 5'-ends.	Uncharacterized protein.	0.952
A0A060VX91	A0A060YXI0	Ribonuclease P protein subunit p29; Component of ribonuclease P, a ribonucleoprotein complex that generates mature tRNA molecules by cleaving their 5'-ends.	POP1 domain-containing protein.	0.999
A0A060W842	A0A060X9I2	Uncharacterized protein; Belongs to the paxillin family.	Uncharacterized protein.	0.964
A0A060W842	A0A060XJJ5	Uncharacterized protein; Belongs to the paxillin family.	Uncharacterized protein.	0.432
A0A060W842	A0A060XRV0	Uncharacterized protein; Belongs to the paxillin family.	Uncharacterized protein.	0.432
A0A060W842	A0A060Y759	Uncharacterized protein; Belongs to the paxillin family.	Uncharacterized protein.	0.954
A0A060W842	A0A060Y8R8	Uncharacterized protein; Belongs to the paxillin family.	Uncharacterized protein.	0.954
A0A060WRA1	A0A060X9I2	Uncharacterized protein.	Uncharacterized protein.	0.964
A0A060WRA1	A0A060XJJ5	Uncharacterized protein.	Uncharacterized protein.	0.432
A0A060WRA1	A0A060XRV0	Uncharacterized protein.	Uncharacterized protein.	0.432
A0A060WRA1	A0A060Y759	Uncharacterized protein.	Uncharacterized protein.	0.954
A0A060WRA1	A0A060Y8R8	Uncharacterized protein.	Uncharacterized protein.	0.954
A0A060WV21	A0A060VX91	Ribonuclease P/MRP protein subunit POP5; Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends.	Ribonuclease P protein subunit p29; Component of ribonuclease P, a ribonucleoprotein complex that generates mature tRNA molecules by cleaving their 5'-ends.	0.999
A0A060WV21	A0A060X9I2	Ribonuclease P/MRP protein subunit POP5; Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends.	Uncharacterized protein.	0.959
A0A060WV21	A0A060YXI0	Ribonuclease P/MRP protein subunit POP5; Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends.	POP1 domain-containing protein.	0.999
A0A060X9I2	A0A060VX91	Uncharacterized protein.	Ribonuclease P protein subunit p29; Component of ribonuclease P, a ribonucleoprotein complex that generates mature tRNA molecules by cleaving their 5'-ends.	0.952
A0A060X9I2	A0A060W842	Uncharacterized protein.	Uncharacterized protein; Belongs to the paxillin family.	0.964
A0A060X9I2	A0A060WRA1	Uncharacterized protein.	Uncharacterized protein.	0.964
A0A060X9I2	A0A060WV21	Uncharacterized protein.	Ribonuclease P/MRP protein subunit POP5; Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends.	0.959