A0A060XK26 protein (Oncorhynchus mykiss) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A060XK26

Uncharacterized protein. (190 aa)

Predicted Functional Partners:

A0A060Y083

0.857

A0A060YAY5

0.828

A0A060WEB4

0.801

A0A060WLM0

0.801

A0A060Y502

0.766

A0A060VWK5

0.750

A0A060XZM9

0.750

A0A060XGC8

0.748

SMD2

0.748

A0A060YG79

0.746

Your Current Organism:

Oncorhynchus mykiss

NCBI taxonomy Id: 8022
Other names: O. mykiss, Oncorhynchus nerka mykiss, Parasalmo mykiss, Salmo mykiss, rainbow trout

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A060VWK5	A0A060XGC8	A0A060VWK5	A0A060XGC8	Sm domain-containing protein.	Small nuclear ribonucleoprotein Sm D2.	0.999
A0A060VWK5	A0A060XK26	A0A060VWK5	A0A060XK26	Sm domain-containing protein.	Uncharacterized protein.	0.750
A0A060VWK5	A0A060XZM9	A0A060VWK5	A0A060XZM9	Sm domain-containing protein.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.512
A0A060VWK5	A0A060Y502	A0A060VWK5	A0A060Y502	Sm domain-containing protein.	Small nuclear ribonucleoprotein G.	0.999
A0A060VWK5	A0A060YG79	A0A060VWK5	A0A060YG79	Sm domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.940
A0A060VWK5	SMD2	A0A060VWK5	C1BHK2	Sm domain-containing protein.	Small nuclear ribonucleoprotein Sm D2.	0.999
A0A060WEB4	A0A060WLM0	A0A060WEB4	A0A060WLM0	Helicase ATP-binding domain-containing protein.	Helicase C-terminal domain-containing protein.	0.996
A0A060WEB4	A0A060XK26	A0A060WEB4	A0A060XK26	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.801
A0A060WEB4	A0A060Y083	A0A060WEB4	A0A060Y083	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.594
A0A060WEB4	A0A060YAY5	A0A060WEB4	A0A060YAY5	Helicase ATP-binding domain-containing protein.	zf-C4pol domain-containing protein.	0.967
A0A060WLM0	A0A060WEB4	A0A060WLM0	A0A060WEB4	Helicase C-terminal domain-containing protein.	Helicase ATP-binding domain-containing protein.	0.996
A0A060WLM0	A0A060XK26	A0A060WLM0	A0A060XK26	Helicase C-terminal domain-containing protein.	Uncharacterized protein.	0.801
A0A060WLM0	A0A060Y083	A0A060WLM0	A0A060Y083	Helicase C-terminal domain-containing protein.	Uncharacterized protein.	0.594
A0A060WLM0	A0A060YAY5	A0A060WLM0	A0A060YAY5	Helicase C-terminal domain-containing protein.	zf-C4pol domain-containing protein.	0.967
A0A060XGC8	A0A060VWK5	A0A060XGC8	A0A060VWK5	Small nuclear ribonucleoprotein Sm D2.	Sm domain-containing protein.	0.999
A0A060XGC8	A0A060XK26	A0A060XGC8	A0A060XK26	Small nuclear ribonucleoprotein Sm D2.	Uncharacterized protein.	0.748
A0A060XGC8	A0A060XZM9	A0A060XGC8	A0A060XZM9	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.999
A0A060XGC8	A0A060Y502	A0A060XGC8	A0A060Y502	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein G.	0.999
A0A060XGC8	A0A060YG79	A0A060XGC8	A0A060YG79	Small nuclear ribonucleoprotein Sm D2.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.912
A0A060XK26	A0A060VWK5	A0A060XK26	A0A060VWK5	Uncharacterized protein.	Sm domain-containing protein.	0.750