A0A060XKG2 protein (Oncorhynchus mykiss) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A060XKG2

Uncharacterized protein. (119 aa)

Predicted Functional Partners:

A0A060WB57

0.666

A0A060XDP7

0.666

A0A061A6M0

0.666

A0A061A7I9

0.666

A0A061AD50

0.666

A0A061AER5

0.666

COPE

0.652

A0A060VUL8

0.646

A0A060WER9

0.646

A0A060XEM2

0.646

Your Current Organism:

Oncorhynchus mykiss

NCBI taxonomy Id: 8022
Other names: O. mykiss, Oncorhynchus nerka mykiss, Parasalmo mykiss, Salmo mykiss, rainbow trout

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A060VUL8	A0A060XKG2	A0A060VUL8	A0A060XKG2	Uncharacterized protein.	Uncharacterized protein.	0.646
A0A060VUL8	COPE	A0A060VUL8	C1BG73	Uncharacterized protein.	Coatomer subunit epsilon; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. The coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. Belongs to the COPE family.	0.768
A0A060WB57	A0A060XKG2	A0A060WB57	A0A060XKG2	Uncharacterized protein.	Uncharacterized protein.	0.666
A0A060WB57	A0A061A6M0	A0A060WB57	A0A061A6M0	Uncharacterized protein.	Uncharacterized protein.	0.849
A0A060WER9	A0A060XKG2	A0A060WER9	A0A060XKG2	Uncharacterized protein.	Uncharacterized protein.	0.646
A0A060WER9	COPE	A0A060WER9	C1BG73	Uncharacterized protein.	Coatomer subunit epsilon; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. The coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. Belongs to the COPE family.	0.768
A0A060XDP7	A0A060XKG2	A0A060XDP7	A0A060XKG2	Uncharacterized protein.	Uncharacterized protein.	0.666
A0A060XDP7	A0A061A6M0	A0A060XDP7	A0A061A6M0	Uncharacterized protein.	Uncharacterized protein.	0.918
A0A060XEM2	A0A060XKG2	A0A060XEM2	A0A060XKG2	Uncharacterized protein.	Uncharacterized protein.	0.646
A0A060XEM2	COPE	A0A060XEM2	C1BG73	Uncharacterized protein.	Coatomer subunit epsilon; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. The coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. Belongs to the COPE family.	0.768
A0A060XKG2	A0A060VUL8	A0A060XKG2	A0A060VUL8	Uncharacterized protein.	Uncharacterized protein.	0.646
A0A060XKG2	A0A060WB57	A0A060XKG2	A0A060WB57	Uncharacterized protein.	Uncharacterized protein.	0.666
A0A060XKG2	A0A060WER9	A0A060XKG2	A0A060WER9	Uncharacterized protein.	Uncharacterized protein.	0.646
A0A060XKG2	A0A060XDP7	A0A060XKG2	A0A060XDP7	Uncharacterized protein.	Uncharacterized protein.	0.666
A0A060XKG2	A0A060XEM2	A0A060XKG2	A0A060XEM2	Uncharacterized protein.	Uncharacterized protein.	0.646
A0A060XKG2	A0A061A6M0	A0A060XKG2	A0A061A6M0	Uncharacterized protein.	Uncharacterized protein.	0.666
A0A060XKG2	A0A061A7I9	A0A060XKG2	A0A061A7I9	Uncharacterized protein.	Uncharacterized protein.	0.666
A0A060XKG2	A0A061AD50	A0A060XKG2	A0A061AD50	Uncharacterized protein.	Uncharacterized protein.	0.666
A0A060XKG2	A0A061AER5	A0A060XKG2	A0A061AER5	Uncharacterized protein.	Uncharacterized protein.	0.666
A0A060XKG2	COPE	A0A060XKG2	C1BG73	Uncharacterized protein.	Coatomer subunit epsilon; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. The coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. Belongs to the COPE family.	0.652