STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A060XLY2Uncharacterized protein. (117 aa)    
Predicted Functional Partners:
A0A060W9E4
PB1 domain-containing protein.
   
 0.994
A0A060WJ74
PB1 domain-containing protein.
   
 0.994
A0A060X038
PB1 domain-containing protein.
   
 0.994
A0A060XZC0
PB1 domain-containing protein.
   
 0.994
A0A060YZ12
Autophagy-related protein 3.
   
 0.992
A0A060Z457
ATG7_N domain-containing protein.
   
 0.991
A0A060XXI9
Autophagy protein 5; Involved in autophagic vesicle formation.
   
 0.971
A0A060Y4Q1
Autophagy protein 5; Involved in autophagic vesicle formation.
   
 0.971
A0A060X1L1
Uncharacterized protein.
   
 0.970
A0A060Y5K5
Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family.
   
 0.964
Your Current Organism:
Oncorhynchus mykiss
NCBI taxonomy Id: 8022
Other names: O. mykiss, Oncorhynchus nerka mykiss, Parasalmo mykiss, Salmo mykiss, rainbow trout
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