STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A060XQV6Helicase ATP-binding domain-containing protein. (961 aa)    
Predicted Functional Partners:
A0A060VUS2
DNA_mis_repair domain-containing protein.
   
 0.995
A0A060WLW5
RING-type domain-containing protein.
   
 0.991
A0A060WN95
Uncharacterized protein.
   
 0.991
A0A060W3T5
Uncharacterized protein.
   
 0.990
A0A060XTL6
BRCT domain-containing protein.
  
 0.990
A0A060YNS6
Uncharacterized protein.
   
 0.990
A0A060Y6E3
Metallophos domain-containing protein.
  
 0.989
A0A060YIW0
Uncharacterized protein.
    
 0.989
A0A060WGD3
Uncharacterized protein.
    
 0.988
A0A060Y436
General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.
    
 0.988
Your Current Organism:
Oncorhynchus mykiss
NCBI taxonomy Id: 8022
Other names: O. mykiss, Oncorhynchus nerka mykiss, Parasalmo mykiss, Salmo mykiss, rainbow trout
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