A0A060XZE7 protein (Oncorhynchus mykiss) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A060XZE7

RING-type domain-containing protein. (343 aa)

Predicted Functional Partners:

A0A060WP34

0.841

A0A060WUL3

0.821

A0A060Y9G0

0.821

A0A060XIM7

0.753

A0A060XRU4

0.753

A0A060XXQ1

0.709

A0A060YPF0

0.700

A0A060WZ23

0.683

A0A060YFT4

0.683

A0A060WZG1

0.653

Your Current Organism:

Oncorhynchus mykiss

NCBI taxonomy Id: 8022
Other names: O. mykiss, Oncorhynchus nerka mykiss, Parasalmo mykiss, Salmo mykiss, rainbow trout

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A060WP34	A0A060WZ23	Ubiquitin carboxyl-terminal hydrolase.	Ubiquitin-like domain-containing protein.	0.992
A0A060WP34	A0A060XZE7	Ubiquitin carboxyl-terminal hydrolase.	RING-type domain-containing protein.	0.841
A0A060WP34	A0A060YFT4	Ubiquitin carboxyl-terminal hydrolase.	Ubiquitin-like domain-containing protein.	0.992
A0A060WUL3	A0A060WZ23	UBX domain-containing protein.	Ubiquitin-like domain-containing protein.	0.999
A0A060WUL3	A0A060WZG1	UBX domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.746
A0A060WUL3	A0A060XZE7	UBX domain-containing protein.	RING-type domain-containing protein.	0.821
A0A060WUL3	A0A060YFT4	UBX domain-containing protein.	Ubiquitin-like domain-containing protein.	0.999
A0A060WUL3	A0A060YPF0	UBX domain-containing protein.	COMM domain-containing protein.	0.797
A0A060WZ23	A0A060WP34	Ubiquitin-like domain-containing protein.	Ubiquitin carboxyl-terminal hydrolase.	0.992
A0A060WZ23	A0A060WUL3	Ubiquitin-like domain-containing protein.	UBX domain-containing protein.	0.999
A0A060WZ23	A0A060WZG1	Ubiquitin-like domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.941
A0A060WZ23	A0A060XXQ1	Ubiquitin-like domain-containing protein.	COMM domain-containing protein.	0.940
A0A060WZ23	A0A060XZE7	Ubiquitin-like domain-containing protein.	RING-type domain-containing protein.	0.683
A0A060WZ23	A0A060Y9G0	Ubiquitin-like domain-containing protein.	UBX domain-containing protein.	0.999
A0A060WZ23	A0A060YPF0	Ubiquitin-like domain-containing protein.	COMM domain-containing protein.	0.864
A0A060WZG1	A0A060WUL3	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	UBX domain-containing protein.	0.746
A0A060WZG1	A0A060WZ23	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	Ubiquitin-like domain-containing protein.	0.941
A0A060WZG1	A0A060XXQ1	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	COMM domain-containing protein.	0.693
A0A060WZG1	A0A060XZE7	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	RING-type domain-containing protein.	0.653
A0A060WZG1	A0A060Y9G0	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	UBX domain-containing protein.	0.746