A0A060YCK1 protein (Oncorhynchus mykiss) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A060YCK1

Uncharacterized protein. (691 aa)

Predicted Functional Partners:

A0A060YM32

0.887

A0A060YAX6

0.797

A0A060YI28

0.797

A0A060YQ31

0.797

A0A060XDT8

0.689

A0A060W250

0.687

A0A060W2K9

0.687

A0A060YY78

0.687

A0A060XDM5

0.658

A0A060Z780

0.658

Your Current Organism:

Oncorhynchus mykiss

NCBI taxonomy Id: 8022
Other names: O. mykiss, Oncorhynchus nerka mykiss, Parasalmo mykiss, Salmo mykiss, rainbow trout

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A060W250	A0A060XDM5	Uncharacterized protein.	MCM domain-containing protein; Belongs to the MCM family.	0.937
A0A060W250	A0A060XDT8	Uncharacterized protein.	Uncharacterized protein.	0.977
A0A060W250	A0A060YAX6	Uncharacterized protein.	DNA helicase; Belongs to the MCM family.	0.961
A0A060W250	A0A060YCK1	Uncharacterized protein.	Uncharacterized protein.	0.687
A0A060W250	A0A060YI28	Uncharacterized protein.	MCM_N domain-containing protein.	0.961
A0A060W250	A0A060YM32	Uncharacterized protein.	Origin recognition complex subunit 1; Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication.	0.980
A0A060W250	A0A060YQ31	Uncharacterized protein.	Uncharacterized protein.	0.961
A0A060W250	A0A060YY78	Uncharacterized protein.	Uncharacterized protein.	0.469
A0A060W250	A0A060Z780	Uncharacterized protein.	Uncharacterized protein.	0.937
A0A060W2K9	A0A060XDM5	Uncharacterized protein.	MCM domain-containing protein; Belongs to the MCM family.	0.937
A0A060W2K9	A0A060XDT8	Uncharacterized protein.	Uncharacterized protein.	0.977
A0A060W2K9	A0A060YAX6	Uncharacterized protein.	DNA helicase; Belongs to the MCM family.	0.961
A0A060W2K9	A0A060YCK1	Uncharacterized protein.	Uncharacterized protein.	0.687
A0A060W2K9	A0A060YI28	Uncharacterized protein.	MCM_N domain-containing protein.	0.961
A0A060W2K9	A0A060YM32	Uncharacterized protein.	Origin recognition complex subunit 1; Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication.	0.980
A0A060W2K9	A0A060YQ31	Uncharacterized protein.	Uncharacterized protein.	0.961
A0A060W2K9	A0A060Z780	Uncharacterized protein.	Uncharacterized protein.	0.937
A0A060XDM5	A0A060W250	MCM domain-containing protein; Belongs to the MCM family.	Uncharacterized protein.	0.937
A0A060XDM5	A0A060W2K9	MCM domain-containing protein; Belongs to the MCM family.	Uncharacterized protein.	0.937
A0A060XDM5	A0A060XDT8	MCM domain-containing protein; Belongs to the MCM family.	Uncharacterized protein.	0.997