STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A060YJT7Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (275 aa)    
Predicted Functional Partners:
A0A060XXY0
Uncharacterized protein.
    
 
 0.999
A0A060VVB2
WD_REPEATS_REGION domain-containing protein.
   
 0.939
A0A060W2G3
Uncharacterized protein.
   
 0.939
A0A060Y028
Uncharacterized protein.
   
 0.902
A0A060WDL8
Thioredoxin domain-containing protein; Belongs to the NDK family.
   
 0.873
A0A060YHE7
NDK domain-containing protein.
   
 0.873
A0A060YH81
Uncharacterized protein.
   
 0.872
A0A060Y6W4
Uncharacterized protein.
  
 0.861
A0A060XN64
Protein kinase domain-containing protein.
    
 
 0.857
A0A060YEC9
CENP-H domain-containing protein.
   
 0.850
Your Current Organism:
Oncorhynchus mykiss
NCBI taxonomy Id: 8022
Other names: O. mykiss, Oncorhynchus nerka mykiss, Parasalmo mykiss, Salmo mykiss, rainbow trout
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