A0A060YMP4 protein (Oncorhynchus mykiss) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A060YMP4

Uncharacterized protein. (991 aa)

Predicted Functional Partners:

A0A060Z5V5

0.981

A0A060X648

0.964

A0A060YIT8

0.964

A0A060YV70

0.964

A0A060W3G5

0.963

A0A060YJN5

0.955

A0A060XJM2

0.951

A0A060XKN4

0.951

A0A060YBP6

0.940

A0A060YCD9

0.940

Your Current Organism:

Oncorhynchus mykiss

NCBI taxonomy Id: 8022
Other names: O. mykiss, Oncorhynchus nerka mykiss, Parasalmo mykiss, Salmo mykiss, rainbow trout

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A060W3G5	A0A060X648	Uncharacterized protein.	RanGAP1_C domain-containing protein.	0.865
A0A060W3G5	A0A060XJM2	Uncharacterized protein.	Nup54 domain-containing protein.	0.994
A0A060W3G5	A0A060XKN4	Uncharacterized protein.	Uncharacterized protein.	0.994
A0A060W3G5	A0A060YBP6	Uncharacterized protein.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.995
A0A060W3G5	A0A060YCD9	Uncharacterized protein.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.995
A0A060W3G5	A0A060YIT8	Uncharacterized protein.	RanGAP1_C domain-containing protein.	0.865
A0A060W3G5	A0A060YJN5	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	0.999
A0A060W3G5	A0A060YMP4	Uncharacterized protein.	Uncharacterized protein.	0.963
A0A060W3G5	A0A060YV70	Uncharacterized protein.	RanGAP1_C domain-containing protein.	0.865
A0A060W3G5	A0A060Z5V5	Uncharacterized protein.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.999
A0A060X648	A0A060W3G5	RanGAP1_C domain-containing protein.	Uncharacterized protein.	0.865
A0A060X648	A0A060XJM2	RanGAP1_C domain-containing protein.	Nup54 domain-containing protein.	0.800
A0A060X648	A0A060XKN4	RanGAP1_C domain-containing protein.	Uncharacterized protein.	0.800
A0A060X648	A0A060YBP6	RanGAP1_C domain-containing protein.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.876
A0A060X648	A0A060YCD9	RanGAP1_C domain-containing protein.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.876
A0A060X648	A0A060YJN5	RanGAP1_C domain-containing protein.	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	0.600
A0A060X648	A0A060YMP4	RanGAP1_C domain-containing protein.	Uncharacterized protein.	0.964
A0A060X648	A0A060YV70	RanGAP1_C domain-containing protein.	RanGAP1_C domain-containing protein.	0.864
A0A060X648	A0A060Z5V5	RanGAP1_C domain-containing protein.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.948
A0A060XJM2	A0A060W3G5	Nup54 domain-containing protein.	Uncharacterized protein.	0.994