A0A060YRQ6 protein (Oncorhynchus mykiss) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A060YRQ6

GMP_synt_C domain-containing protein. (162 aa)

Predicted Functional Partners:

A0A060XL37

0.982

A0A060VVV3

0.981

A0A061ADU1

0.965

A0A060XCI5

0.962

A0A060XJV6

0.962

IMPDH-3

0.962

GMPR

0.960

GMPR-2

0.960

A0A060YU18

0.958

A0A060Z7D7

0.958

Your Current Organism:

Oncorhynchus mykiss

NCBI taxonomy Id: 8022
Other names: O. mykiss, Oncorhynchus nerka mykiss, Parasalmo mykiss, Salmo mykiss, rainbow trout

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A060VVV3	A0A060XCI5	A0A060VVV3	A0A060XCI5	Pribosyltran domain-containing protein.	IMPDH domain-containing protein.	0.772
A0A060VVV3	A0A060XJV6	A0A060VVV3	A0A060XJV6	Pribosyltran domain-containing protein.	Uncharacterized protein.	0.772
A0A060VVV3	A0A060YRQ6	A0A060VVV3	A0A060YRQ6	Pribosyltran domain-containing protein.	GMP_synt_C domain-containing protein.	0.981
A0A060VVV3	A0A060YU18	A0A060VVV3	A0A060YU18	Pribosyltran domain-containing protein.	IMPDH domain-containing protein.	0.899
A0A060VVV3	A0A060Z7D7	A0A060VVV3	A0A060Z7D7	Pribosyltran domain-containing protein.	IMPDH domain-containing protein.	0.899
A0A060VVV3	GMPR	A0A060VVV3	A0A060XGQ0	Pribosyltran domain-containing protein.	GMP reductase; Catalyzes the irreversible NADPH-dependent deamination of GMP to IMP. It functions in the conversion of nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and in maintaining the intracellular balance of A and G nucleotides.	0.899
A0A060VVV3	GMPR-2	A0A060VVV3	A0A060Y2V7	Pribosyltran domain-containing protein.	GMP reductase; Catalyzes the irreversible NADPH-dependent deamination of GMP to IMP. It functions in the conversion of nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and in maintaining the intracellular balance of A and G nucleotides.	0.899
A0A060VVV3	IMPDH-3	A0A060VVV3	A0A060XWX8	Pribosyltran domain-containing protein.	Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth.	0.772
A0A060XCI5	A0A060VVV3	A0A060XCI5	A0A060VVV3	IMPDH domain-containing protein.	Pribosyltran domain-containing protein.	0.772
A0A060XCI5	A0A060XL37	A0A060XCI5	A0A060XL37	IMPDH domain-containing protein.	Pribosyltran domain-containing protein.	0.772
A0A060XCI5	A0A060YRQ6	A0A060XCI5	A0A060YRQ6	IMPDH domain-containing protein.	GMP_synt_C domain-containing protein.	0.962
A0A060XCI5	A0A060YU18	A0A060XCI5	A0A060YU18	IMPDH domain-containing protein.	IMPDH domain-containing protein.	0.863
A0A060XCI5	A0A060Z7D7	A0A060XCI5	A0A060Z7D7	IMPDH domain-containing protein.	IMPDH domain-containing protein.	0.839
A0A060XCI5	GMPR	A0A060XCI5	A0A060XGQ0	IMPDH domain-containing protein.	GMP reductase; Catalyzes the irreversible NADPH-dependent deamination of GMP to IMP. It functions in the conversion of nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and in maintaining the intracellular balance of A and G nucleotides.	0.862
A0A060XCI5	GMPR-2	A0A060XCI5	A0A060Y2V7	IMPDH domain-containing protein.	GMP reductase; Catalyzes the irreversible NADPH-dependent deamination of GMP to IMP. It functions in the conversion of nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and in maintaining the intracellular balance of A and G nucleotides.	0.864
A0A060XJV6	A0A060VVV3	A0A060XJV6	A0A060VVV3	Uncharacterized protein.	Pribosyltran domain-containing protein.	0.772
A0A060XJV6	A0A060XL37	A0A060XJV6	A0A060XL37	Uncharacterized protein.	Pribosyltran domain-containing protein.	0.772
A0A060XJV6	A0A060YRQ6	A0A060XJV6	A0A060YRQ6	Uncharacterized protein.	GMP_synt_C domain-containing protein.	0.962
A0A060XJV6	A0A060YU18	A0A060XJV6	A0A060YU18	Uncharacterized protein.	IMPDH domain-containing protein.	0.839
A0A060XJV6	A0A060Z7D7	A0A060XJV6	A0A060Z7D7	Uncharacterized protein.	IMPDH domain-containing protein.	0.839