STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A060YTQ5FAM212 domain-containing protein. (276 aa)    
Predicted Functional Partners:
A0A060XRI8
Uncharacterized protein.
    
   0.514
A0A060XYX5
Uncharacterized protein.
    
   0.514
A0A060YCF7
BRCT domain-containing protein; Belongs to the DNA polymerase type-X family.
    
   0.481
A0A060YTS8
Uncharacterized protein.
    
   0.481
A0A060X5D9
Endo/exonuclease/phosphatase domain-containing protein.
    
   0.418
A0A060XI32
Uncharacterized protein.
    
   0.418
A0A060XR34
Endo/exonuclease/phosphatase domain-containing protein.
    
   0.418
A0A060YRR2
Uncharacterized protein.
    
   0.418
A0A060YV45
Endo/exonuclease/phosphatase domain-containing protein.
    
   0.418
A0A060W6P6
DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity.
    
   0.407
Your Current Organism:
Oncorhynchus mykiss
NCBI taxonomy Id: 8022
Other names: O. mykiss, Oncorhynchus nerka mykiss, Parasalmo mykiss, Salmo mykiss, rainbow trout
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