STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A060YWT3Uncharacterized protein. (155 aa)    
Predicted Functional Partners:
A0A060VLZ9
CPSF_A domain-containing protein.
    
 0.964
A0A060X6D7
CPSF_A domain-containing protein.
    
 0.964
A0A060YY44
Uncharacterized protein.
     
 0.823
A0A060X0K8
DDB1- and CUL4-associated factor 11; May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex; Belongs to the WD repeat LEC14B family.
    
 0.765
A0A060YWD2
Uncharacterized protein.
   
 
 0.746
A0A060ZFR7
Uncharacterized protein.
   
 
 0.746
A0A060WS49
CULLIN_2 domain-containing protein; Belongs to the cullin family.
   
 0.741
A0A060X9T4
Cullin domain-containing protein; Belongs to the cullin family.
   
 0.741
A0A060XGE0
CULLIN_2 domain-containing protein; Belongs to the cullin family.
   
 0.741
A0A060XHM2
Cullin_Nedd8 domain-containing protein.
   
 0.741
Your Current Organism:
Oncorhynchus mykiss
NCBI taxonomy Id: 8022
Other names: O. mykiss, Oncorhynchus nerka mykiss, Parasalmo mykiss, Salmo mykiss, rainbow trout
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