STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A060YZG7IF rod domain-containing protein; Belongs to the intermediate filament family. (119 aa)    
Predicted Functional Partners:
A0A060W620
UBIQUITIN_CONJUGAT_2 domain-containing protein.
   
 0.926
A0A060WDS6
UBIQUITIN_CONJUGAT_2 domain-containing protein.
   
 0.926
A0A060WMC0
UBIQUITIN_CONJUGAT_2 domain-containing protein.
   
 0.926
A0A060W6Z3
Mothers against decapentaplegic homolog.
    
  0.869
A0A060XHZ7
Mothers against decapentaplegic homolog.
    
  0.869
A0A060WYX0
Mothers against decapentaplegic homolog.
    
  0.813
A0A060Y8V6
Mothers against decapentaplegic homolog.
    
  0.813
A0A060YVI6
UBIQUITIN_CONJUGAT_2 domain-containing protein.
    
 0.748
A0A060VUN0
Uncharacterized protein.
    
 
 0.734
A0A060W1Z2
Uncharacterized protein.
    
 
 0.734
Your Current Organism:
Oncorhynchus mykiss
NCBI taxonomy Id: 8022
Other names: O. mykiss, Oncorhynchus nerka mykiss, Parasalmo mykiss, Salmo mykiss, rainbow trout
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