STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A060Z1Q4USP domain-containing protein; Belongs to the peptidase C19 family. (138 aa)    
Predicted Functional Partners:
A0A060YHL7
Uncharacterized protein.
   
 
 0.728
RM21
39S ribosomal protein L21, mitochondrial.
   
 
 0.722
A0A060ZXZ7
MATH domain-containing protein.
    
 0.720
A0A060Y577
S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.
    
 
 0.719
RT14
Mitochondrial 28S ribosomal protein S14.
    
 
 0.716
A0A060XC61
S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.
    
 
 0.698
A0A060YXM7
Uncharacterized protein.
   
 
 0.696
A0A060VQW1
KOW domain-containing protein; Belongs to the universal ribosomal protein uL24 family.
   
 
 0.688
A0A060Y867
Uncharacterized protein.
   
 
 0.683
A0A060WKV4
RIBOSOMAL_L9 domain-containing protein.
   
 
 0.682
Your Current Organism:
Oncorhynchus mykiss
NCBI taxonomy Id: 8022
Other names: O. mykiss, Oncorhynchus nerka mykiss, Parasalmo mykiss, Salmo mykiss, rainbow trout
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