STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A060Z3J4HDAC_interact domain-containing protein. (225 aa)    
Predicted Functional Partners:
A0A060X6S6
Uncharacterized protein.
    
 0.981
A0A060W6N5
ARID domain-containing protein.
    
 0.977
A0A060WG79
Uncharacterized protein.
    
 0.977
A0A060WGL3
ARID domain-containing protein.
    
 0.977
A0A060YN94
Tudor-knot domain-containing protein.
    
 0.977
A0A061A6M2
MRG domain-containing protein.
   
 0.972
A0A060W1W3
Uncharacterized protein.
    
 0.953
A0A060W4Y3
Uncharacterized protein.
    
 0.953
A0A060VZ47
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
   
 0.952
A0A060XIY4
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
   
 0.952
Your Current Organism:
Oncorhynchus mykiss
NCBI taxonomy Id: 8022
Other names: O. mykiss, Oncorhynchus nerka mykiss, Parasalmo mykiss, Salmo mykiss, rainbow trout
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.