A0A060Z9Q0 protein (Oncorhynchus mykiss) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

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Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

A0A060Z9Q0

Ig-like domain-containing protein. (310 aa)

Predicted Functional Partners:

A0A060WZ23

0.660

A0A060YFT4

0.660

A0A060VZM9

0.602

A0A060Y3B2

0.602

A0A060YCF8

0.602

A0A060WHG0

0.572

A0A060XTX7

0.572

A0A060XV19

0.572

UBIQ

0.559

Q9PT09_ONCMY

0.559

Your Current Organism:

Oncorhynchus mykiss

NCBI taxonomy Id: 8022
Other names: O. mykiss, Oncorhynchus nerka mykiss, Parasalmo mykiss, Salmo mykiss, rainbow trout

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A060VZM9	A0A060WHG0	A0A060VZM9	A0A060WHG0	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.741
A0A060VZM9	A0A060WZ23	A0A060VZM9	A0A060WZ23	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.974
A0A060VZM9	A0A060XTX7	A0A060VZM9	A0A060XTX7	Uncharacterized protein.	Uncharacterized protein.	0.741
A0A060VZM9	A0A060XV19	A0A060VZM9	A0A060XV19	Uncharacterized protein.	Uncharacterized protein.	0.741
A0A060VZM9	A0A060Y3B2	A0A060VZM9	A0A060Y3B2	Uncharacterized protein.	Uncharacterized protein.	0.985
A0A060VZM9	A0A060YCF8	A0A060VZM9	A0A060YCF8	Uncharacterized protein.	RLR CTR domain-containing protein.	0.979
A0A060VZM9	A0A060YFT4	A0A060VZM9	A0A060YFT4	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.974
A0A060VZM9	A0A060Z9Q0	A0A060VZM9	A0A060Z9Q0	Uncharacterized protein.	Ig-like domain-containing protein.	0.602
A0A060VZM9	Q9PT09_ONCMY	A0A060VZM9	Q9PT09	Uncharacterized protein.	Ubiquitin.	0.962
A0A060VZM9	UBIQ	A0A060VZM9	C1BG62	Uncharacterized protein.	Ubiquitin.	0.962
A0A060WHG0	A0A060VZM9	A0A060WHG0	A0A060VZM9	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.741
A0A060WHG0	A0A060WZ23	A0A060WHG0	A0A060WZ23	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.998
A0A060WHG0	A0A060XTX7	A0A060WHG0	A0A060XTX7	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.932
A0A060WHG0	A0A060XV19	A0A060WHG0	A0A060XV19	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.931
A0A060WHG0	A0A060Y3B2	A0A060WHG0	A0A060Y3B2	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.741
A0A060WHG0	A0A060YCF8	A0A060WHG0	A0A060YCF8	Ubiquitin-like domain-containing protein.	RLR CTR domain-containing protein.	0.741
A0A060WHG0	A0A060YFT4	A0A060WHG0	A0A060YFT4	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.998
A0A060WHG0	A0A060Z9Q0	A0A060WHG0	A0A060Z9Q0	Ubiquitin-like domain-containing protein.	Ig-like domain-containing protein.	0.572
A0A060WHG0	Q9PT09_ONCMY	A0A060WHG0	Q9PT09	Ubiquitin-like domain-containing protein.	Ubiquitin.	0.994
A0A060WHG0	UBIQ	A0A060WHG0	C1BG62	Ubiquitin-like domain-containing protein.	Ubiquitin.	0.994

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Network Stats

number of nodes:

11

number of edges:

39

average node degree:

7.09

avg. local clustering coefficient:

0.808

expected number of edges:

14

PPI enrichment p-value:

1.31e-08

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0008289

Lipid binding

3 of 8

1.61

1.06

0.0130

GO:0046933

Proton-transporting ATP synthase activity, rotational mechanism

3 of 13

1.4

0.87

0.0216

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0045263

Proton-transporting ATP synthase complex, coupling factor F(o)

3 of 10

1.51

1.16

0.0060

GO:0016021

Integral component of membrane

3 of 43

0.88

0.51

0.0469

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:240

Oxidative phosphorylation

3 of 11

1.47

0.95

0.0171

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

mwe00190

Oxidative phosphorylation

3 of 15

1.34

0.94

0.0115

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0045263

Proton-transporting ATP synthase complex, coupling factor F(o)

3 of 10

1.51

1.11

0.0079

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0446

Lipid-binding

3 of 8

1.61

1.24

0.0054

KW-0138

CF(0)

3 of 9

1.56

1.21

0.0054

KW-0066

ATP synthesis

3 of 11

1.47

1.15

0.0054

KW-1003

Cell membrane

3 of 20

1.21

0.89

0.0092

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF00137

ATP synthase subunit C

3 of 8

1.61

1.44

0.0018

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR035921

F/V-ATP synthase subunit C superfamily

3 of 8

1.61

1.16

0.0079

IPR020537

ATP synthase, F0 complex, subunit C, DCCD-binding site

3 of 8

1.61

1.16

0.0079

IPR005953

ATP synthase, F0 complex, subunit C, bacterial/chloroplast

3 of 8

1.61

1.16

0.0079

IPR002379

V-ATPase proteolipid subunit C-like domain

3 of 8

1.61

1.16

0.0079

IPR000454

ATP synthase, F0 complex, subunit C

3 of 8

1.61

1.16

0.0079

(more ...)

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