STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TMA20Malignant T-cell-amplified sequence. (181 aa)    
Predicted Functional Partners:
A0A060XIN5
Density-regulated protein; Belongs to the DENR family.
   
 
 0.999
A0A060X292
SUI1 domain-containing protein.
   
 
 0.979
EIF1B
Eukaryotic translation initiation factor 1b.
   
 
 0.979
UBIM
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 
 0.963
UBIM-2
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 
 0.963
A0A060WTV0
Uncharacterized protein.
    
   0.947
A0A060VW29
Ribosomal_S10 domain-containing protein.
   
 
 0.934
A0A060Y9K3
WD_REPEATS_REGION domain-containing protein.
   
   0.929
A0A060Z4Y5
40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.
   
   0.928
A0A060Y577
S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.
   
   0.927
Your Current Organism:
Oncorhynchus mykiss
NCBI taxonomy Id: 8022
Other names: O. mykiss, Oncorhynchus nerka mykiss, Parasalmo mykiss, Salmo mykiss, rainbow trout
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.