STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
smoc1SPARC-related modular calcium-binding protein 1. (448 aa)    
Predicted Functional Partners:
LOC106600641
Sidoreflexin.
      
 0.624
tmem181
Transmembrane protein 181 isoform X1.
      
 0.624
toe1
Target of EGR1 protein 1.
      
 0.624
LOC106599369
Target of EGR1 protein 1-like.
      
 0.624
zn710
Zinc finger protein 710 isoform X1.
      
 0.623
tdrp
Testis development-related protein.
      
 0.595
wdr27
WD repeat-containing protein 27 isoform X2.
      
 0.593
LOC106609075
Leucine-rich repeat LGI family member 2-like.
      
 0.560
ufm1
Ubiquitin-fold modifier 1; Ubiquitin-like modifier which can be covalently attached to substrate proteins as a monomer or a lysine-linked polymer in a post- translational process called ufmylation. Ufmylation on lysine residues of proteins may play a crucial role in a number of cellular processes. Belongs to the UFM1 family.
      
 0.559
LOC106583970
Prostaglandin G/H synthase 2-like isoform X1.
      
 0.556
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.