hhat protein (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

hhat

Protein-cysteine N-palmitoyltransferase HHAT; Belongs to the membrane-bound acyltransferase family. (489 aa)

Predicted Functional Partners:

LOC106599328

0.892

LOC106578610

0.892

LOC106569233

0.892

shh

0.892

LOC106593012

0.886

ENSSSAP00000052676

0.886

LOC106590699

0.886

LOC106573971

0.859

ENSSSAP00000018990

0.859

LOC106586914

0.859

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSSAP00000018990	ENSSSAP00000052676	ENSSSAP00000018990	ENSSSAP00000052676	annotation not available	annotation not available	0.572
ENSSSAP00000018990	LOC106569233	ENSSSAP00000018990	ENSSSAP00000079095	annotation not available	Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.	0.596
ENSSSAP00000018990	LOC106578610	ENSSSAP00000018990	ENSSSAP00000067823	annotation not available	Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.	0.596
ENSSSAP00000018990	LOC106590699	ENSSSAP00000018990	ENSSSAP00000080281	annotation not available	Protein-cysteine N-palmitoyltransferase HHAT-like protein.	0.572
ENSSSAP00000018990	LOC106593012	ENSSSAP00000018990	ENSSSAP00000052669	annotation not available	Protein-cysteine N-palmitoyltransferase HHAT-like protein.	0.572
ENSSSAP00000018990	LOC106599328	ENSSSAP00000018990	ENSSSAP00000039338	annotation not available	Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.	0.596
ENSSSAP00000018990	hhat	ENSSSAP00000018990	ENSSSAP00000001005	annotation not available	Protein-cysteine N-palmitoyltransferase HHAT; Belongs to the membrane-bound acyltransferase family.	0.859
ENSSSAP00000018990	shh	ENSSSAP00000018990	ENSSSAP00000084017	annotation not available	Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.	0.596
ENSSSAP00000052676	ENSSSAP00000018990	ENSSSAP00000052676	ENSSSAP00000018990	annotation not available	annotation not available	0.572
ENSSSAP00000052676	LOC106569233	ENSSSAP00000052676	ENSSSAP00000079095	annotation not available	Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.	0.560
ENSSSAP00000052676	LOC106573971	ENSSSAP00000052676	ENSSSAP00000018977	annotation not available	Indian hedgehog protein-like.	0.572
ENSSSAP00000052676	LOC106578610	ENSSSAP00000052676	ENSSSAP00000067823	annotation not available	Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.	0.560
ENSSSAP00000052676	LOC106586914	ENSSSAP00000052676	ENSSSAP00000031059	annotation not available	Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.	0.572
ENSSSAP00000052676	LOC106590699	ENSSSAP00000052676	ENSSSAP00000080281	annotation not available	Protein-cysteine N-palmitoyltransferase HHAT-like protein.	0.438
ENSSSAP00000052676	LOC106593012	ENSSSAP00000052676	ENSSSAP00000052669	annotation not available	Protein-cysteine N-palmitoyltransferase HHAT-like protein.	0.508
ENSSSAP00000052676	LOC106599328	ENSSSAP00000052676	ENSSSAP00000039338	annotation not available	Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.	0.560
ENSSSAP00000052676	hhat	ENSSSAP00000052676	ENSSSAP00000001005	annotation not available	Protein-cysteine N-palmitoyltransferase HHAT; Belongs to the membrane-bound acyltransferase family.	0.886
ENSSSAP00000052676	shh	ENSSSAP00000052676	ENSSSAP00000084017	annotation not available	Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.	0.560
LOC106569233	ENSSSAP00000018990	ENSSSAP00000079095	ENSSSAP00000018990	Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.	annotation not available	0.596
LOC106569233	ENSSSAP00000052676	ENSSSAP00000079095	ENSSSAP00000052676	Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.	annotation not available	0.560