Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LOC106589910Tetraspanin. (245 aa)    
Predicted Functional Partners:
LOC106589939
DAN domain family member 5-like.
      
 0.697
ENSSSAP00000084411
annotation not available
      
 0.579
ENSSSAP00000027814
annotation not available
   
  
 0.542
CCL28
C-C motif chemokine 28 precursor.
      
 0.492
pdzd11
PDZ domain-containing protein 11 isoform X2.
     
 0.469
pdzd11-2
PDZ domain-containing protein 11 isoform X3.
     
 0.469
LOC106561116
Mesogenin-1-like.
      
 0.451
LOC106591641
Endonuclease III-like protein 1; Bifunctional DNA N-glycosylase with associated apurinic/apyrimidinic (AP) lyase function that catalyzes the first step in base excision repair (BER), the primary repair pathway for the repair of oxidative DNA damage. The DNA N-glycosylase activity releases the damaged DNA base from DNA by cleaving the N-glycosidic bond, leaving an AP site. The AP lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination. Primarily recognizes and repairs oxidative base damage of pyrimidines; Belongs to the Nth/MutY family.
      
 0.417
LOC106560593
Transmembrane 4 L6 family member 1-like.
      
 0.417
xrcc3
DNA repair protein XRCC3.
      
 0.416
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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