STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC106602320Probable E3 ubiquitin-protein ligase HERC6. (725 aa)    
Predicted Functional Partners:
ube2l3
Ubiquitin-conjugating enzyme E2 L3-like; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.795
irf-3
Interferon regulatory factor 3 isoform X1.
   
 0.699
ctnnb1
Catenin beta-1.
    
  0.693
LOC106612584
E3 ubiquitin-protein ligase TRIP12-like isoform X1.
   
 
 0.648
LOC106580884
E3 ubiquitin-protein ligase TRIP12 isoform X1.
   
 
 0.648
LOC100194654
Salmo salar ribosomal protein S27-3 (LOC100194654), mRNA.
    
  0.624
LOC106577118
ubiquitin-40S ribosomal protein S27a.
    
  0.624
ENSSSAP00000097191
annotation not available
    
 0.616
ub2l3
Salmo salar Ubiquitin-conjugating enzyme E2 L3 (ub2l3), mRNA.
    
 0.616
LOC106602323
Probable E3 ubiquitin-protein ligase HERC3 isoform X1.
   
 
0.615
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.