LOC106603050 protein (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC106603050

Transgelin-3-like. (199 aa)

Predicted Functional Partners:

wdr90

0.908

enkur

0.731

ENSSSAP00000017985

0.723

LOC106582056

0.658

efhc1

0.656

efhc2

0.656

WDR1

0.600

LOC106583413

0.600

LOC106570406

0.557

LOC106570406-2

0.557

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSSAP00000017985	LOC106570406	ENSSSAP00000017985	ENSSSAP00000032117	annotation not available	Cilia- and flagella-associated protein 20 isoform X1.	0.947
ENSSSAP00000017985	LOC106570406-2	ENSSSAP00000017985	ENSSSAP00000045413	annotation not available	Cilia- and flagella-associated protein 20.	0.947
ENSSSAP00000017985	LOC106582056	ENSSSAP00000017985	ENSSSAP00000100491	annotation not available	EF-hand domain-containing family member B-like isoform X2.	0.992
ENSSSAP00000017985	LOC106603050	ENSSSAP00000017985	ENSSSAP00000001015	annotation not available	Transgelin-3-like.	0.723
ENSSSAP00000017985	efhc1	ENSSSAP00000017985	ENSSSAP00000069376	annotation not available	EF-hand domain-containing protein 1 isoform X1.	0.981
ENSSSAP00000017985	efhc2	ENSSSAP00000017985	ENSSSAP00000104872	annotation not available	EF-hand domain-containing family member C2 isoform X1.	0.981
ENSSSAP00000017985	enkur	ENSSSAP00000017985	ENSSSAP00000095867	annotation not available	Enkurin.	0.992
ENSSSAP00000017985	wdr90	ENSSSAP00000017985	ENSSSAP00000064648	annotation not available	WD repeat-containing protein 90.	0.999
LOC106570406	ENSSSAP00000017985	ENSSSAP00000032117	ENSSSAP00000017985	Cilia- and flagella-associated protein 20 isoform X1.	annotation not available	0.947
LOC106570406	LOC106582056	ENSSSAP00000032117	ENSSSAP00000100491	Cilia- and flagella-associated protein 20 isoform X1.	EF-hand domain-containing family member B-like isoform X2.	0.899
LOC106570406	LOC106603050	ENSSSAP00000032117	ENSSSAP00000001015	Cilia- and flagella-associated protein 20 isoform X1.	Transgelin-3-like.	0.557
LOC106570406	efhc1	ENSSSAP00000032117	ENSSSAP00000069376	Cilia- and flagella-associated protein 20 isoform X1.	EF-hand domain-containing protein 1 isoform X1.	0.925
LOC106570406	efhc2	ENSSSAP00000032117	ENSSSAP00000104872	Cilia- and flagella-associated protein 20 isoform X1.	EF-hand domain-containing family member C2 isoform X1.	0.925
LOC106570406	enkur	ENSSSAP00000032117	ENSSSAP00000095867	Cilia- and flagella-associated protein 20 isoform X1.	Enkurin.	0.931
LOC106570406-2	ENSSSAP00000017985	ENSSSAP00000045413	ENSSSAP00000017985	Cilia- and flagella-associated protein 20.	annotation not available	0.947
LOC106570406-2	LOC106582056	ENSSSAP00000045413	ENSSSAP00000100491	Cilia- and flagella-associated protein 20.	EF-hand domain-containing family member B-like isoform X2.	0.899
LOC106570406-2	LOC106603050	ENSSSAP00000045413	ENSSSAP00000001015	Cilia- and flagella-associated protein 20.	Transgelin-3-like.	0.557
LOC106570406-2	efhc1	ENSSSAP00000045413	ENSSSAP00000069376	Cilia- and flagella-associated protein 20.	EF-hand domain-containing protein 1 isoform X1.	0.925
LOC106570406-2	efhc2	ENSSSAP00000045413	ENSSSAP00000104872	Cilia- and flagella-associated protein 20.	EF-hand domain-containing family member C2 isoform X1.	0.925
LOC106570406-2	enkur	ENSSSAP00000045413	ENSSSAP00000095867	Cilia- and flagella-associated protein 20.	Enkurin.	0.931