STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
noc4lNucleolar complex protein 4 homolog. (530 aa)    
Predicted Functional Partners:
utp18
U3 small nucleolar RNA-associated protein 18 homolog.
   
 0.999
nop14
Nucleolar protein 14 isoform X1.
   
 0.999
PDCD11
Protein RRP5 homolog.
   
 0.999
LOC106563613
U3 small nucleolar RNA-associated protein 14 homolog A-like.
   
 0.999
LOC106610597
WD repeat-containing protein 43-like.
   
 0.999
utp15
U3 small nucleolar RNA-associated protein 15 homolog.
   
 0.999
ENSSSAP00000019751
annotation not available
   
 0.999
nat10
RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein THUMPD1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.
   
 
 0.999
utp4
Cirhin.
   
 0.999
wdr75
WD repeat-containing protein 75 isoform X2.
   
 0.999
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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