STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100196115F-BAR and double SH3 domains protein 2 isoform X2. (777 aa)    
Predicted Functional Partners:
LOC106611341
Intersectin-2-like.
   
0.851
ENSSSAP00000067020
Intersectin 2b.
   
0.851
LOC100286499
Intersectin-1 isoform X5.
   
0.766
LOC106574310
Intersectin-1-like isoform X8.
   
0.766
LOC106583318
Cell surface glycoprotein 1-like isoform X1.
   
 0.763
tsen2
tRNA-splicing endonuclease subunit Sen2; Constitutes one of the two catalytic subunit of the tRNA- splicing endonuclease complex, a complex responsible for identification and cleavage of the splice sites in pre-tRNA. It cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3'-cyclic phosphate and 5'-OH termini. There are no conserved sequences at the splice sites, but the intron is invariably located at the same site in the gene, placing the splice sites an invariant distance from the constant structural [...]
    
   0.636
LOC106611548
Uncharacterized protein LOC106611548.
    
  0.589
pdzd7
PDZ domain-containing protein 7.
    
  0.589
LOC106606940-2
Growth arrest-specific protein 7-like isoform X2.
    
 0.584
LOC106601448
Growth arrest-specific protein 7-like.
    
 0.584
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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