STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pus1tRNA pseudouridine synthase A. (392 aa)    
Predicted Functional Partners:
wdr4
tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family.
   
 
 0.922
ENSSSAP00000103937
annotation not available
   
 
 0.920
dus3l
tRNA-dihydrouridine(47) synthase [NAD(P)(+)].
  
 
 0.909
DKC1
H/ACA ribonucleoprotein complex subunit 4.
   
 0.892
rpac1
DNA-directed RNA polymerases I and III subunit RPAC1 isoform X1.
  
  
 0.864
LOC106590870
Probable tRNA pseudouridine synthase 1.
   
 0.834
LOC106605701
39S ribosomal protein L17, mitochondrial-like isoform X1; Belongs to the bacterial ribosomal protein bL17 family.
  
  
 0.831
mrpl17
Salmo salar ribosomal protein L17 mitochondrial-like protein (mrpl17), mRNA.
  
  
 0.831
ENSSSAP00000040288
annotation not available
   
 0.827
LOC106563393
H/ACA ribonucleoprotein complex subunit 4-like.
   
 0.816
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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