LOC106592855 protein (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC106592855

NACHT, LRR and PYD domains-containing protein 1-like. (348 aa)

Predicted Functional Partners:

ENSSSAP00000019633

0.906

ENSSSAP00000028635

0.906

LOC106570292

0.906

LOC106590958

0.906

LOC106595029

0.906

LOC106592827

0.900

ENSSSAP00000042716

0.900

UNC79

0.839

LOC106611001

0.839

ENSSSAP00000028410

0.658

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSSAP00000019633	ENSSSAP00000028635	ENSSSAP00000019633	ENSSSAP00000028635	Caspase recruitment domain-containing protein 8-like.	Caspase recruitment domain-containing protein 8.	0.901
ENSSSAP00000019633	ENSSSAP00000042716	ENSSSAP00000019633	ENSSSAP00000042716	Caspase recruitment domain-containing protein 8-like.	NACHT, LRR and PYD domains-containing protein 1-like.	0.900
ENSSSAP00000019633	LOC106570292	ENSSSAP00000019633	ENSSSAP00000058672	Caspase recruitment domain-containing protein 8-like.	Uncharacterized protein LOC106570292.	0.902
ENSSSAP00000019633	LOC106590958	ENSSSAP00000019633	ENSSSAP00000065514	Caspase recruitment domain-containing protein 8-like.	Caspase recruitment domain-containing protein 8-like isoform X1.	0.900
ENSSSAP00000019633	LOC106592827	ENSSSAP00000019633	ENSSSAP00000000988	Caspase recruitment domain-containing protein 8-like.	Uncharacterized protein LOC106592827 isoform X1.	0.900
ENSSSAP00000019633	LOC106592855	ENSSSAP00000019633	ENSSSAP00000001077	Caspase recruitment domain-containing protein 8-like.	NACHT, LRR and PYD domains-containing protein 1-like.	0.906
ENSSSAP00000019633	LOC106595029	ENSSSAP00000019633	ENSSSAP00000067834	Caspase recruitment domain-containing protein 8-like.	NACHT, LRR and PYD domains-containing protein 1-like.	0.900
ENSSSAP00000028410	LOC106592855	ENSSSAP00000028410	ENSSSAP00000001077	annotation not available	NACHT, LRR and PYD domains-containing protein 1-like.	0.658
ENSSSAP00000028635	ENSSSAP00000019633	ENSSSAP00000028635	ENSSSAP00000019633	Caspase recruitment domain-containing protein 8.	Caspase recruitment domain-containing protein 8-like.	0.901
ENSSSAP00000028635	ENSSSAP00000042716	ENSSSAP00000028635	ENSSSAP00000042716	Caspase recruitment domain-containing protein 8.	NACHT, LRR and PYD domains-containing protein 1-like.	0.900
ENSSSAP00000028635	LOC106570292	ENSSSAP00000028635	ENSSSAP00000058672	Caspase recruitment domain-containing protein 8.	Uncharacterized protein LOC106570292.	0.900
ENSSSAP00000028635	LOC106590958	ENSSSAP00000028635	ENSSSAP00000065514	Caspase recruitment domain-containing protein 8.	Caspase recruitment domain-containing protein 8-like isoform X1.	0.901
ENSSSAP00000028635	LOC106592827	ENSSSAP00000028635	ENSSSAP00000000988	Caspase recruitment domain-containing protein 8.	Uncharacterized protein LOC106592827 isoform X1.	0.900
ENSSSAP00000028635	LOC106592855	ENSSSAP00000028635	ENSSSAP00000001077	Caspase recruitment domain-containing protein 8.	NACHT, LRR and PYD domains-containing protein 1-like.	0.906
ENSSSAP00000028635	LOC106595029	ENSSSAP00000028635	ENSSSAP00000067834	Caspase recruitment domain-containing protein 8.	NACHT, LRR and PYD domains-containing protein 1-like.	0.900
ENSSSAP00000042716	ENSSSAP00000019633	ENSSSAP00000042716	ENSSSAP00000019633	NACHT, LRR and PYD domains-containing protein 1-like.	Caspase recruitment domain-containing protein 8-like.	0.900
ENSSSAP00000042716	ENSSSAP00000028635	ENSSSAP00000042716	ENSSSAP00000028635	NACHT, LRR and PYD domains-containing protein 1-like.	Caspase recruitment domain-containing protein 8.	0.900
ENSSSAP00000042716	LOC106570292	ENSSSAP00000042716	ENSSSAP00000058672	NACHT, LRR and PYD domains-containing protein 1-like.	Uncharacterized protein LOC106570292.	0.900
ENSSSAP00000042716	LOC106590958	ENSSSAP00000042716	ENSSSAP00000065514	NACHT, LRR and PYD domains-containing protein 1-like.	Caspase recruitment domain-containing protein 8-like isoform X1.	0.900
ENSSSAP00000042716	LOC106592827	ENSSSAP00000042716	ENSSSAP00000000988	NACHT, LRR and PYD domains-containing protein 1-like.	Uncharacterized protein LOC106592827 isoform X1.	0.900