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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106560439Pyruvate carboxylase, mitochondrial-like. (183 aa)    
Predicted Functional Partners:
LOC106574468
propionyl-CoA carboxylase beta chain, mitochondrial-like.
  
 0.855
mccc2
methylcrotonoyl-CoA carboxylase beta chain, mitochondrial isoform X1.
  
 0.855
LOC106613885
methylcrotonoyl-CoA carboxylase beta chain, mitochondrial-like isoform X1.
  
 0.855
LOC106575421
propionyl-CoA carboxylase beta chain, mitochondrial-like.
  
 0.855
ENSSSAP00000078132
annotation not available
  
 
 0.854
hlcs
Biotin--protein ligase isoform X1.
  
 
 0.854
LOC106605032
Malic enzyme.
   
 0.840
LOC106586750
Malic enzyme.
   
 0.840
me2
Malic enzyme.
   
 0.840
LOC106581960
Malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+).
   
 0.840
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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